KidsUrologyCare.com Dr. Parviz Hajiyev
Voiding and infections

Urinary tract infection in children

Signs of urinary tract infection in children by age, how to collect a urine sample correctly, treatment and which children need further tests.

Quick answers

Is it urgent?
An infection with fever, especially in an infant, needs treatment the same day.
How is it diagnosed?
With a urinalysis and urine culture of a correctly collected sample.
Who needs further tests?
Infants and very unwell children with a febrile infection, recurrent or atypical cases.
Prevention
Treating constipation, enough water, regular toilet visits.

What is a urinary tract infection?

A urinary tract infection is inflammation of the urinary tract caused by bacteria. Most often E. coli, a bacterium that lives in the bowel, travels up the urethra into the bladder and sometimes reaches the kidney.

  • Bladder infection (cystitis). Cystitis usually does not cause fever.
  • Kidney infection (pyelonephritis). It usually causes fever and is more serious.

In the first year it is more common in boys, especially uncircumcised boys; after one year of age it is more common in girls.

Signs by age

In infants the signs are often nonspecific:

  • fever without a clear cause (often the only sign),
  • irritability, poor feeding, vomiting,
  • poor weight gain, prolonged jaundice (in a newborn),
  • foul-smelling urine.

In older children:

  • burning and pain when urinating,
  • frequent and urgent urination, new wetting,
  • pain in the lower abdomen,
  • cloudy, foul-smelling, sometimes bloody urine,
  • fever, flank or back pain (in kidney infection).

Diagnosis: a correct urine sample

The diagnosis is made with a urinalysis and urine culture. How reliable the result is depends on how the sample is collected:

  • In toilet-trained children: a midstream sample after washing the genitals.
  • In children still in diapers: a catheter sample (or, rarely, suprapubic aspiration) for urinalysis and culture. The “clean catch” method is acceptable for a first screening test.
  • A urine bag should not be used to collect a sample for culture. It is quickly contaminated by skin bacteria and a positive result is often false. A bag sample is useful only when it is completely negative, which makes infection unlikely.
  • The sample is collected before the first antibiotic dose.

More: urinalysis and culture.

Treatment

Treatment should not be delayed: starting antibiotics later than 48–72 hours after the fever begins increases the risk of kidney scarring.

  • Cystitis without fever: oral antibiotic, usually for 3–5 days.
  • Infection with fever: a 4–7 day course of antibiotics, by mouth or intravenously. Babies younger than 2 months, children who are very unwell and those who cannot keep down oral medicine are given intravenous antibiotics, usually in the hospital.
  • The antibiotic is changed according to the culture result when needed.
  • Plenty of fluids, and medicines for fever and pain suited to age and weight.

Which children need further tests?

  • After an infection with fever: kidney and bladder ultrasound. In infants and very unwell children it is done within 24 hours; in children treated at home it can be scheduled later.
  • VCUG (voiding cystourethrogram) to check for reflux is not done during the infection and is selective. It is considered after a first febrile infection before 12 months of age, with recurrent febrile infections, an abnormal ultrasound or DMSA, or an atypical infection at any age. After a typical first infection with a normal ultrasound, waiting to see whether a second infection occurs is also an option.
  • If kidney scarring is suspected: DMSA at least 6 months after the infection.

Preventing recurrence

  • in toilet-trained children with febrile or recurrent infections, checking and treating bladder and bowel dysfunction, including constipation,
  • enough water through the day and a toilet visit every 2–3 hours,
  • in girls, wiping from front to back and avoiding bubble baths,
  • in boys with recurrent infections and phimosis, steroid cream for the foreskin lowers recurrence; circumcision is considered when there is also reflux or another urinary tract problem,
  • low-dose antibiotic prophylaxis for children at risk of recurrent infection (for example, with reflux or a dilated ureter in the first year of life), at the doctor’s decision.

When to seek urgent care

If any of the following is present, do not wait for a routine appointment: call the doctor or go to the nearest emergency department.

  • Fever of 38°C or higher in an infant younger than 3 months
  • Vomiting and being unable to keep down the antibiotic
  • Lethargy, drowsiness, refusing to eat
  • Fever with flank or back pain
  • Fever continuing 48 hours after starting the antibiotic

Note for pediatricians and family doctors

Plastic bags should not be used for urine culture: a bag specimen is useful only when negative (dipstick negative for both leukocyte esterase and nitrite excludes UTI). In non-toilet-trained children, urinalysis and culture are done on a catheter or suprapubic aspiration specimen; clean-catch urine is acceptable for screening. Kidney and bladder ultrasound within 24 hours in infants with febrile UTI and in acutely ill children. VCUG is selective and not done in the acute phase: consider it after a first febrile UTI under 12 months, recurrent febrile UTI, abnormal ultrasound or DMSA, and atypical UTI at any age. Febrile UTI is treated for 4–7 days, simple cystitis for 3–5 days.

What happens at the visit?

  1. We review the number of past infections, whether they came with fever, and culture results.
  2. Toilet habits, constipation, circumcision status and the genitals are assessed.
  3. Kidney and bladder ultrasound is planned, plus VCUG or DMSA when needed.
  4. An individual plan is made to prevent recurrence.
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Frequently asked questions

Bacteria were found in the urine, but my child has no symptoms. Is treatment needed?

In most cases, no. Asymptomatic bacteriuria, especially in school-age girls, does not need treatment, and antibiotics sometimes make room for more harmful bacteria to settle.

How should the urine sample be collected?

The genitals are washed with water, the child starts to urinate, the first part goes into the toilet and the middle part is caught in a sterile container. In children still in diapers, a catheter sample is the reliable one for culture; a “clean catch” sample can be used for screening; a urine bag is not suitable for culture. The sample is taken before the first antibiotic dose and should reach the laboratory within 1–2 hours.

Does cranberry juice help?

Cranberry products lower the risk of recurrence somewhat (moderate-quality evidence), but they do not replace the main treatment or the correction of constipation and toilet habits.

Related topics

Sources

References to the EAU Paediatric Urology guidelines were checked against the 2026 edition (October 2026).

This information is for educational purposes and does not replace medical advice. Decisions about your child’s treatment are made with the doctor after an examination.

Updated:

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